correctedAUC (version 0.0.3)

AUCest.Reiser: Calculate AUC corrected for measurement error based on Reiser's (2000) method

Description

Calculate AUC corrected for measurement error based on Reiser's (2000) method.

Usage

AUCest.Reiser( datFrame,  sidVar = "subjID",  obsVar = "y",  grpVar = "grp",  repVar = "myrep",  alpha = 0.05)

Arguments

datFrame

a data frame with at least the following columns: y: numerical vector of observations; subjID: vector of subject ids; grp: group indicator: 1 means case; and 0 means conrol; myrep: integer vector indicating replication. should be consecutive positive integer starting from 1.

sidVar

character. variable name for subject id in the data frame datFrame.

obsVar

character. variable name for observations in the data frame datFrame.

grpVar

character. variable name for group indictor in the data frame datFrame.

repVar

character. variable name for replication indictor in the data frame datFrame.

alpha

confidence interval level $100(1-\alpha$%

Value

A list of 4 elements

AUC.c

AUC corrected for measurement error based on Reiser's (2000) method.

sd.AUC.c

standard error of the estimated AUC corrected for measurement error based on Reiser's (2000) method.

AUC.c.low

lower bound of the AUC.c.

AUC.c.upp

upper bound of the AUC.c.

References

Rosner B, Tworoger S, Qiu W (2015) Correcting AUC for Measurement Error. J Biom Biostat 6:270. doi:10.4172/2155-6180.1000270

Examples

  set.seed(1234567)
  tt=genSimDataReiser(
       nX = 100, 
       nY = 100, 
       sigma.X2 = 1, 
       mu.X = 0.25, 
       sigma.Y2 = 1, 
       mu.Y = 0, 
       sigma.epsilon2 = 0.5, 
       sigma.eta2 = 0.5) 

  print(dim(tt$datFrame))
  print(tt$datFrame[1:2,1:3])
  print(tt$theta2)
  print(tt$mu.true)
  print(tt$AUC.true)

  res = AUCest.Reiser(
    datFrame = tt$datFrame, 
    sidVar = "subjID",
    obsVar = "y",
    grpVar = "grp",
    repVar = "myrep",
    alpha = 0.05)
  print(res)