cqn (version 1.18.0)

cqnplot: Plot the systematic effect estimated as part of a CQN normalization.~

Description

This function plots the estimated systematic effect which are removed suring CQN normalization.

Usage

cqnplot(x, n = 1, col = "grey60", ylab = "QR fit", xlab = "", type = "l", lty = 1, ...)

Arguments

x

The result of a call to cqn; an object of class cqn.

n

Which systematic effect is plotted.

col

A vector of colors, as in plot.

ylab

y-label as in plot.

xlab

x-label as in plot.

type

type, as in plot.

lty

line type, as in plot.

...

These arguments are passed to matplot

Value

This function is invoked for its side effect.

Examples

data(montgomery.subset)
data(sizeFactors.subset)
data(uCovar)
cqn.subset <- cqn(montgomery.subset, lengths = uCovar$length, 
                  x = uCovar$gccontent, sizeFactors = sizeFactors.subset,
                  verbose = TRUE)
cqnplot(cqn.subset, n = 1)