Trait vs Trait scatterplot, colored by the selected genetic locus
plotTraits(genotypes, phenotypes, phenocol = c(1, 2), marker = 1, doRank = FALSE)TODO
Matrix of genotypes. (individuals x markers)
Matrix of phenotypes. (individuals x phenotypes)
Which phenotype column(s) should be plotted against each other, Default: phenotype 1 versus 2
Which marker (column in genotypes) should be used to add genotype as a color of the dots.
Transform quantitative data into ranked data before analyzing the slope.
Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com
TODO
TODO
CTLscan - Main function to scan for CTL
CTLsignificant - Significant interactions from a CTLscan
CTLnetwork - Create a CTL network from a CTLscan
image.CTLobject - Heatmap overview of a CTLscan
plot.CTLscan - Plot the CTL curve for a single trait
library(ctl)
data(ath.metabolites) # Arabidopsis Thaliana data set
plotTraits(ath.metab$genotypes, ath.metab$phenotypes, marker=75, doRank = TRUE)
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