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ctl (version 1.0.0-10)

scanSD: scanSD - Analyze the differences in Standard Deviation between genotypes between two traits

Description

Analyze the differences in Standard Deviation between genotypes between two traits

Usage

scanSD(genotypes, phenotypes, phenocol=c(1,2), doRank = FALSE)

Value

TODO

Arguments

genotypes

Matrix of genotypes. (individuals x markers)

phenotypes

Matrix of phenotypes. (individuals x phenotypes)

phenocol

Which phenotype column(s) should be plotted against each other, Default: phenotype 1 versus 2

doRank

Transform quantitative data into ranked data before analyzing the slope.

Author

Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com

Details

TODO

References

TODO

See Also

  • CTLscan - Main function to scan for CTL

  • CTLsignificant - Significant interactions from a CTLscan

  • CTLnetwork - Create a CTL network from a CTLscan

  • image.CTLobject - Heatmap overview of a CTLscan

  • plot.CTLscan - Plot the CTL curve for a single trait

Examples

Run this code
  library(ctl)
  data(multitrait)      # Arabidopsis Thaliana (R/qtl cross object)

  sds <- scanSD(pull.geno(multitrait),pull.pheno(multitrait))

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