b.Init
contains two sets (roc
and rocnse
) of
initial coefficients including mutation and selection parameters for
3 amino acids 'A', 'C', and 'D' in matrix
format.
Both sets are in b
format. ex.train
contains a training set of 100 sequences including
3 reu13.df
(codon counts in reu13
data frame format
divided by amino acids),
3 y
(codon counts in simplified data frame format
divided by amino acids),
3 n
(total amino acid counts in vector format
divided by amino acids), and
phi.Obs
(observed phi values in vector format).
ex.test
contains a testing set of the other 100 sequences in the
same format of ex.train
.