addFeatures

addFeatures,CuffSet-method

addFeatures,CuffData-method


An object of class ('CuffSet' or 'CuffData')


object


A data.frame of features to add.  1st column MUST contain ids (ie. gene_id for 'gene' features, isoform_id for 'isoform' features, etc)


features


One of c('genes','isoforms','TSS','CDS') to indicate which type of featurs you are being added, and to what data-level.
  

level


Adds a data.frame of features to a the SQLite backend database.


Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data.  In addition, provides numerous plotting functions for commonly used visualizations.

Loyal A Goff

cummeRbund

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

addFeatures function

An object of class ('CuffSet' or 'CuffData')

A data.frame of features to add.  1st column MUST contain ids (ie. gene_id for 'gene' features, isoform_id for 'isoform' features, etc)

One of c('genes','isoforms','TSS','CDS') to indicate which type of featurs you are being added, and to what data-level.

Adds a data.frame of features to a the SQLite backend database.

addFeatures: addFeatures

Description

Usage

Arguments

Value

Details

References

Examples