cummeRbund (version 2.14.0)

countMatrix: countMatrix

Description

Retrieve count values as gene by condition matrix

Usage

"countMatrix"(object,fullnames=FALSE,sampleIdList)
"repCountMatrix"(object,fullnames=FALSE,repIdList)

Arguments

object

An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature')

fullnames

A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels)

sampleIdList

A vector of sample names to subset the resulting matrix.

repIdList

A vector of replicate names to subset the resulting replicate matrix.

Value

A feature x condition matrix of count values.

Details

None.

References

None.

Examples

	data(sampleData)
	countMatrix(sampleGeneSet)
	repCountMatrix(sampleGeneSet)