cummeRbund (version 2.14.0)

csBoxplot: csBoxplot

Description

Creates a ggplot2 plot object with a geom_box layer displaying summary statistics for FPKM values across samples (x).

Usage

"csBoxplot"(object, logMode=TRUE, pseudocount=0.0001, replicates=FALSE,...)

Arguments

object

An object of class CuffData.

logMode

A logical argument to log10 -transform FPKM values.

pseudocount

Value added to FPKM to avoid log-transform issues.

replicates

A logical value whether or not to plot individual replicates or aggregate condition values.

...

Additional arguments to csBoxplot

Value

A ggplot2 plot object with a geom_box layer.

Details

None

References

None

Examples

	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create CuffSet object
	genes<-a@genes #CuffData object for all genes
	csBoxplot(genes)