Usage
"csDistHeat"(object, replicates=F, samples.not.genes=T, logMode=T, pseudocount=1.0, heatscale=c(low='lightyellow',mid='orange',high='darkred'), heatMidpoint=NULL, ...)
Arguments
object
An object of class 'CuffFeatureSet' or 'CuffGeneSet'
replicates
A logical argument whether or not to use individual replicate FPKM values as opposed to condition FPKM estimates. (default: FALSE)
samples.not.genes
Compute distances between samples rather than genes. If False,
compute distances between genes.
logMode
A logical argument to log10-transform FPKM values prior to plotting.
pseudocount
Value to be added to FPKM for appropriate log transformation and clustering. (Avoids zero-based errors)
heatscale
A list with min length=2, max length=3 that describe the the color scale.
heatMidpoint
Value for midpoint of color scale.
...
Additional arguments to csHeatmap