An accessor method to retrieve differential expression data from a 'CuffData', 'CuffFeatureSet', or 'CuffFeature' object
Usage
"diffData"(object, x, y, features=FALSE)
"diffTable"(object,logCutoffValue=99999)
Arguments
object
An object of class ('CuffData' or 'CuffFeatureSet')
x
Optional, if x and y are both missing, data for all pairwise differential comparisons are returned, otherwise if x and y are sample names from the 'samples' table,
than only differential data pertaining to those two samples are returned.
y
See 'x'
features
A logical value that returns all feature-level data as part of data.frame when true. object must be of class 'CuffData'.
logCutoffValue
Cutoff value for FC estimates to convert to [-]Inf values. Should never really be needed...