cummeRbund (version 2.14.0)

fpkmMatrix: fpkmMatrix

Description

Retrieve FPKM values as gene by condition (fpkmMatrix) or gene by replicate (repFpkmMatrix) matrix

Usage

"fpkmMatrix"(object,fullnames=FALSE,sampleIdList)
"repFpkmMatrix"(object,fullnames=FALSE,repIdList)

Arguments

object

An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature')

fullnames

A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels)

sampleIdList

A vector of sample names to subset the resulting matrix.

repIdList

A vector of sample names to subset the resulting matrix.

Value

A feature x condition matrix of FPKM values.

Details

None.

References

None.

Examples

	data(sampleData)
	fpkmMatrix(sampleGeneSet)
	repFpkmMatrix(sampleGeneSet)