cummeRbund (version 2.14.0)

getGene: getGene

Description

Primary accessor from a CuffSet object to retrive all related information for 1 (one) given gene, indexed by gene_id or gene_short_name.

Usage

"getGene"(object, geneId, sampleIdList=NULL)

Arguments

object

An object of class 'CuffSet' (Primary 'pointer' object for Cufflinks data).

geneId

A character string to identify which gene for which you would like to retrieve all information.

sampleIdList

A vector of sample names used to subset or re-order samples in returned object

Value

Returns a CuffGene object containing all related information for a given gene_id or gene_short_name

Details

None.

References

None.

Examples

	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create master CuffSet object
	myGene<-getGene(a,"PINK1") # Retrieve all information for gene "PINK1"