cummeRbund (version 2.14.0)

getGenes: getGenes

Description

Primary accessor from a CuffSet object to retrive all related information for >1 (MANY) given genes, indexed by gene_id or gene_short_name.

Usage

"getGenes"(object, geneIdList, sampleIdList=NULL)

Arguments

object

An object of class 'CuffSet' (Primary 'pointer' object for Cufflinks data).

geneIdList

A vector of gene_ids or gene_short_namesto identify which genes for which you would like to retrieve all information.

sampleIdList

A vector of sample names used to subset or re-order samples in returned object

Value

Returns a CuffGeneSet object containing all related information for a given set of gene_id or gene_short_name values

Details

None.

References

None.

Examples

	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create master CuffSet object
	data(sampleData)
	sampleIDs
	myGene<-getGenes(a,sampleIDs) # Retrieve all information for a set of 20 'sample' genes.