Usage
steadyStates(model, file = NULL, smatrix = NULL, states = NULL, rates = NULL, forcings = NULL, givenCQs = NULL, neglect = NULL, sparsifyLevel = 2, outputFormat = "R")
Arguments
model
Either name of the csv-file or the eqnlist of the model. If NULL, specify smatrix, states and rates by hand.
file
Name of the file to which the steady-state equations are saved.
Read this file with readRDS. smatrix
Numeric matrix, stiochiometry matrix of the system
states
Character vector, state vector of the system
rates
Character vector, flux vector of the system
forcings
Character vector with the names of the forcings
givenCQs
Character vector with conserved quantities. Use the format c("A + pA = totA", "B + pB = totB"). If NULL, conserved quantities are automatically calculated.
neglect
Character vector with names of states and parameters that must not be used for solving the steady-state equations
sparsifyLevel
numeric, Upper bound for length of linear combinations used for simplifying the stoichiometric matrix
outputFormat
Define the output format. By default "R" generating dMod
compatible output. To obtain an output appropriate for d2d [1] "M" must be
selected.