getDadaOpt

(Optional). Character.
The DADA option(s) to get.

option

The dada2 package provides "OTU picking" functionality, but instead
of picking OTUs the DADA2 algorithm exactly infers samples sequences. The dada2
pipeline starts from demultiplexed fastq files, and outputs inferred sample
sequences and associated abundances after removing substitution and chimeric
errors. Taxonomic classification is also available via a native implementation
of the RDP classifier method.

getDadaOpt: Get DADA options

Description

Usage

Arguments

Value

See Also

Examples