gl.prop.shared: Calculates a similarity (distance) matrix for individuals on the proportion of
shared alleles
@family distance
Description
This script calculates an individual based distance matrix. It uses an C++
implementation, so package Rcpp needs to be installed and it is therefore
really fast (once it has compiled the function after the first run).
Usage
gl.propShared(x)
Value
A similarity matrix
Arguments
x
Name of the genlight containing the SNP genotypes [required].
#takes some time at the first run of the function...# \donttest{res <- gl.propShared(bandicoot.gl)
res[1:5,1:7] #show only a small part of the matrix# }