dartR.base (version 1.0.5)

gl2gi: Converts a genind object into a genlight object

Description

Converts a genind object into a genlight object

Converts a genlight object to genind object

Usage

gi2gl(gi, parallel = FALSE, verbose = NULL)
gl2gi(x, probar = FALSE, verbose = NULL)

Value

A genlight object, with all slots filled.

A genind object, with all slots filled.

Arguments

gi

A genind object [required].

parallel

Switch to deactivate parallel version. It might not be worth to run it parallel most of the times [default FALSE].

verbose

Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].

x

A genlight object [required].

probar

If TRUE, a progress bar will be displayed for long loops [default TRUE].

Author

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)

Details

Be aware due to ambiguity which one is the reference allele a combination of gi2gl(gl2gi(gl)) does not return an identical object (but in terms of analysis this conversions are equivalent)

This function uses a faster version of df2genind (from the adegenet package)

See Also

Other linker: gl2bayesAss(), gl2bayescan(), gl2bpp(), gl2demerelate(), gl2eigenstrat(), gl2faststructure(), gl2gds(), gl2genalex(), gl2genepop(), gl2geno(), gl2hiphop(), gl2phylip(), gl2plink(), gl2related(), gl2sa(), gl2structure(), gl2treemix(), gl2vcf()

Other linker: gl2bayesAss(), gl2bayescan(), gl2bpp(), gl2demerelate(), gl2eigenstrat(), gl2faststructure(), gl2gds(), gl2genalex(), gl2genepop(), gl2geno(), gl2hiphop(), gl2phylip(), gl2plink(), gl2related(), gl2sa(), gl2structure(), gl2treemix(), gl2vcf()