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dartR.base (version 1.0.5)

utils.read.ped: An internal script [Custodian to provide a title]

Description

WARNING: UTILITY SCRIPTS ARE FOR INTERNAL USE ONLY AND SHOULD NOT BE USED BY END USERS AS THEIR USE OUT OF CONTEXT COULD LEAD TO UNPREDICTABLE OUTCOMES.

Usage

utils.read.ped(
  file,
  snps,
  which,
  split = "\t| +",
  sep = ".",
  na.strings = "0",
  lex.order = FALSE,
  show_warnings = TRUE
)

Value

The resultant genlight object

Arguments

file

Custodian to provide

snps

Custodian to provide

which

Custodian to provide

split

Custodian to provide

sep

Custodian to provide

na.strings

Custodian to provide

lex.order

Custodian to provide

show_warnings

Custodian to provide

#[Custodian to provide other parameter descriptions]

Author

Custodian: Luis Mijangos (Post to https://groups.google.com/d/forum/dartr)

Details

#[Custodian to provide details]

See Also

Other utilities: gl.alf(), utils.check.datatype(), utils.collapse.matrix(), utils.dart2genlight(), utils.dist.binary(), utils.flag.start(), utils.hamming(), utils.het.pop(), utils.impute, utils.is.fixed(), utils.jackknife(), utils.n.var.invariant(), utils.plot.save(), utils.read.fasta(), utils.recalc.avgpic(), utils.recalc.callrate(), utils.recalc.freqhets(), utils.recalc.freqhomref(), utils.recalc.freqhomsnp(), utils.recalc.maf(), utils.reset.flags(), utils.transpose(), utils.vcfr2genlight.polyploid()