dimRed (version 0.2.0)

cophenetic_correlation,dimRedResult-method: Method cophenetic_correlation

Description

Calculate the correlation between the distance matrices in high and low dimensioal space.

Usage

# S4 method for dimRedResult
cophenetic_correlation(object, d = stats::dist,
  cor_method = "pearson")

Arguments

object

of class dimRedResult

d

the distance function to use.

cor_method

The correlation method.

See Also

Other Quality scores for dimensionality reduction: AUC_lnK_R_NX,dimRedResult-method, LCMC,dimRedResult-method, Q_NX,dimRedResult-method, Q_global,dimRedResult-method, Q_local,dimRedResult-method, R_NX,dimRedResult-method, distance_correlation,dimRedResult-method, mean_R_NX,dimRedResult-method, plot_R_NX, quality,dimRedResult-method, reconstruction_error,dimRedResult-method, reconstruction_rmse,dimRedResult-method, total_correlation,dimRedResult-method