Rdocumentation
powered by
Learn R Programming
⚠️
There's a newer version (0.2.6) of this package.
Take me there.
dimRed (version 0.2.5)
A Framework for Dimensionality Reduction
Description
A collection of dimensionality reduction techniques from R packages and a common interface for calling the methods.
Copy Link
Link to current version
Version
Version
0.2.6
0.2.5
0.2.4
0.2.3
0.2.2
0.2.1
0.2.0
0.1.0
0.0.3
Install
install.packages('dimRed')
Monthly Downloads
1,373
Version
0.2.5
License
GPL-3 | file LICENSE
Maintainer
Guido Kraemer
Last Published
March 10th, 2022
Functions in dimRed (0.2.5)
Search all functions
DiffusionMaps-class
Diffusion Maps
DRR-class
Dimensionality Reduction via Regression
Isomap-class
Isomap embedding
KamadaKawai-class
Graph Embedding via the Kamada Kawai Algorithm
HLLE-class
Hessian Locally Linear Embedding
FruchtermanReingold-class
Fruchterman Reingold Graph Layout
FastICA-class
Independent Component Analysis
MDS-class
Metric Dimensional Scaling
LaplacianEigenmaps-class
Laplacian Eigenmaps
DrL-class
Distributed Recursive Graph Layout
PCA_L1-class
Principal Component Analysis with L1 error.
Q_NX,dimRedResult-method
Method Q_NX
AUC_lnK_R_NX,dimRedResult-method
Method AUC_lnK_R_NX
dimRedMethodList
dimRedMethodList
dimRedMethod-class
Class "dimRedMethod"
AutoEncoder-class
AutoEncoder
R_NX,dimRedResult-method
Method R_NX
Q_global,dimRedResult-method
Method Q_global
UMAP-class
Umap embedding
Q_local,dimRedResult-method
Method Q_local
as.data.frame
Converts to data.frame
LCMC,dimRedResult-method
Method LCMC
LLE-class
Locally Linear Embedding
getOrgData
Method getOrgData
getNDim
Method getNDim
embed
dispatches the different methods for dimensionality reduction
kPCA-class
Kernel PCA
getPars
Method getPars
getOtherData
Method getOtherData
maximize_correlation,dimRedResult-method
Maximize Correlation with the Axes
getData
Method getData
mixColorRamps
Mixing color ramps
getDimRedData
Method getDimRedData
as.dimRedData
Converts to dimRedData
makeKNNgraph
makeKNNgraph
tSNE-class
t-Distributed Stochastic Neighborhood Embedding
reconstruction_rmse,dimRedResult-method
Method reconstruction_rmse
mean_R_NX,dimRedResult-method
Method mean_R_NX
getMeta
Method getMeta
getRotationMatrix
getRotationMatrix
nMDS-class
Non-Metric Dimensional Scaling
total_correlation,dimRedResult-method
Method total_correlation
installSuggests
getSuggests
dimRedData-class
Class "dimRedData"
reconstruction_error,dimRedResult-method
Method reconstruction_error
quality,dimRedResult-method
Quality Criteria for dimensionality reduction.
dimRed-package
The dimRed package
cophenetic_correlation,dimRedResult-method
Method cophenetic_correlation
dataSets
Example Data Sets for dimensionality reduction
NNMF-class
Non-Negative Matrix Factorization
PCA-class
Principal Component Analysis
dimRedResult-class
Class "dimRedResult"
ndims
Method ndims
distance_correlation,dimRedResult-method
Method distance_correlation
plot
Plotting of dimRed* objects
print
Method print
plot_R_NX
plot_R_NX