SNPs


   <code>SNPs</code> depicts a typical input layout for the function <code>snp2gp</code>. Data can be passed to this function as either a <code>dataframe</code>, or a file name for a tab delimited file with the same structure as <code>SNPs</code>.


Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Weir and Cockerham's 1984 F-statistics are also calculated.
Various plotting features are also provided, as well as Chi-square tests of
genetic heterogeneity are also provided.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.

SNPs: Example input format for `snp2gp` function

Description

Usage

Arguments

Format