divSimCo:
Similarity coefficients for co-dominant diploid genenotype data
Description
Calculation of similarity coefficients for co-dominant genotype data, following Kosman and Leonard, (2005).
Usage
divSimCo(infile = NULL, loci = FALSE, boots = 0)
Arguments
infile
Specifying the name of the `genepop' (Rousset, 2008) file from which the statistics are to be calculated This file can be in either the 3 digit of 2 digit format. See http://genepop.curtin.edu.au/help_input.html for detail on the genepop file format.
loci
A logical argument, specifying whether similarity matrices for each locus should be calculated. If FALSE, only a global similarity matrix is given.
boots
An integer, specifying the number of bootstrapped matrices to generate. Loci are resampled with replacement.
Value
A list containing either one (global) if loci = FALSE, or two elements (global and loci) if loci = TRUE.
Details
Similarity coefficients are calculated according to Kosman and Leonard, (2005).
Multi-locus values are calculated from all loci without missing data.
References
Kosman E, Leonard K (2005) Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species. Molecular ecology, 14, 415-424.