statCalc

infile

Logical indication of whether WC f-stats should be calculated

Logical indiction of whether <code>rsDat</code> should be bootstrapped

A character string indicating whether bootstrapping should be
  carried out over individuals within samples (<code>``individuals''</code>.), or
  across loci (<code>``loci''</code>).

ci_type

internal

Allows the calculation of both genetic diversity partition
statistics, genetic differentiation statistics, and locus informativeness
for ancestry assignment.
It also provides users with various option to calculate
bootstrapped 95\% confidence intervals both across loci,
for pairwise population comparisons, and to plot these results interactively.
Parallel computing capabilities and pairwise results without
bootstrapping are provided.
Weir and Cockerham's 1984 F-statistics are also calculated.
Various plotting features are also provided, as well as Chi-square tests of
genetic heterogeneity are also provided.
Functionality for the calculation of various diversity parameters is
possible for RAD-seq derived SNP data sets containing thousands of marker loci.
A shiny application for the development of microsatellite multiplexes is
also available.

statCalc: Internal differentiation calculator

Description

Usage

Arguments