history.from.sim.discrete

This function extracts a history object from a simulated
 phylogeny produced by <code>tree.bisse</code>.

models

history.from.sim

Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution.  Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.

Rich FitzJohn

diversitree

Comparative 'Phylogenetic' Analyses of Diversification

Richard G. FitzJohn

Emma Goldberg

Karen Magnuson-Ford

Roger Sidje

history.from.sim function

<dl> <dt>phy</dt>
<dd>A phylogeny produced by <code>tree.bisse</code>.</dd> <dt>states</dt>
<dd>Possible states. For <code>tree.bisse</code> this
 should be <code>0:1</code>.</dd></dl>

Arguments

Author

Extract Character Histories From Simulations — history.from.sim

<dl>

 <dt>phy</dt>
<dd>A phylogeny produced by <code>tree.bisse</code>.</dd>

 <dt>states</dt>
<dd>Possible states. For <code>tree.bisse</code> this
 should be <code>0:1</code>.</dd>

</dl>

history.from.sim: Extract Character Histories From Simulations

Description

Usage

Arguments

Author