ROOT.FLAT

ROOT.EQUI

ROOT.OBS

ROOT.GIVEN

ROOT.BOTH

ROOT.ALL

ROOT.MAX

These constants are used by <code><a href="/link/make.bisse?package=diversitree&version=0.9-3" rd-options="" data-mini-rdoc="diversitree::make.bisse">make.bisse</a></code>, 
  <code><a href="/link/make.geosse?package=diversitree&version=0.9-3" rd-options="" data-mini-rdoc="diversitree::make.geosse">make.geosse</a></code> and <code><a href="/link/make.mkn?package=diversitree&version=0.9-3" rd-options="" data-mini-rdoc="diversitree::make.mkn">make.mkn</a></code>
  for specifying root behaviour.

internal

Constants

Contains a number of comparative phylogenetic methods,
        mostly focussing on analysing diversification and character
        evolution.  Contains implementations of BiSSE (Binary State
        Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
        56: 701) and its unresolved tree extensions (FitzJohn et al.
        2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
        and Extinction), QuaSSE (Quantitative State Speciation and
        Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
        (Geographic State Speciation and Extinction; Goldberg et al.
        2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
        Otto 2012: Am. Nat.)  Other included methods include Markov
        models of discrete and continuous trait evolution and constant
        rate speciation and extinction.

Constants: Constants Used by Diversitree

Description

Usage

Arguments