check.fftC

check.cvodes

Logical: causes an error if the FFTW or CVODES are not
    available if <code>TRUE</code>

error

These check to see if FFTW or CVODES support was included
  in diversitree.  They rarely need to be called directly.

utilities

check

Contains a number of comparative phylogenetic methods,
        mostly focussing on analysing diversification and character
        evolution.  Contains implementations of BiSSE (Binary State
        Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
        56: 701) and its unresolved tree extensions (FitzJohn et al.
        2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
        and Extinction), QuaSSE (Quantitative State Speciation and
        Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
        (Geographic State Speciation and Extinction; Goldberg et al.
        2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
        Otto 2012: Am. Nat.)  Other included methods include Markov
        models of discrete and continuous trait evolution and constant
        rate speciation and extinction.

check: Check Capabilities of the Diversitree Install

Description

Usage

Arguments