geosse.phy

This is a test GeoSSE tree, created by Emma Goldberg

datasets

Contains a number of comparative phylogenetic methods,
        mostly focussing on analysing diversification and character
        evolution.  Contains implementations of BiSSE (Binary State
        Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
        56: 701) and its unresolved tree extensions (FitzJohn et al.
        2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
        and Extinction), QuaSSE (Quantitative State Speciation and
        Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
        (Geographic State Speciation and Extinction; Goldberg et al.
        2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
        Otto 2012: Am. Nat.)  Other included methods include Markov
        models of discrete and continuous trait evolution and constant
        rate speciation and extinction.

Richard FitzJohn

diversitree

diversitree: comparative phylogenetic analyses of
        diversification

geosse.phy function

An 'ape' tree, with additional element <code>tip.state</code> that
  includes the tip states.

format

Generated from a C program by Emma Goldberg

geosse.phy: Example GeoSSE Tree

Description

Usage

Arguments

format

source