divo (version 1.0.1)

Tools for Analysis of Diversity and Similarity in Biological Systems

Description

A set of tools for empirical analysis of diversity (a number and frequency of different types in population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.

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Version

Install

install.packages('divo')

Monthly Downloads

587

Version

1.0.1

License

GPL (>= 3)

Maintainer

Maciej Pietrzak

Last Published

December 16th, 2019

Functions in divo (1.0.1)

ens

ens Effective Number of Species

mh Morisita-Horn Index

srd

srd Symmetrized Renyi's Divergence

rd Renyi's Divergence

Example dataset for divo package

i.in

i.in Information Index (I index) for 2-Way Table

pg Power-Geometric Index

pg.ht

pg.ht Power-Geometric Index with the Horvitz-Thompson Correction

ens.ht

ens.ht Effective Number of Species with the Horvitz-Thompson Correction

TCR.Data

TCR.Data Repertoires of Naive and Regulatory T-cell Populations

ji Jaccard Index

i.inp

i.inp Information Index (I index) for 2-Way, 2 Column Table

dp.ht

dp.ht Diversity Profile with the Horvitz-Thompson Adjustment

cvg

cvg Coverage

divo

Tools for Analysis of Diversity and Similarity in Biological Systems

dp Diversity Profile

li Sorensen Index