dna (version 2.1-2)

get.common.networks-methods: Method for Function get.common.networks

Description

get.common.networks-methods

Methods

signature(object = "pairOfNetworks")

returns the pair of networks from an object of class "pairOfNetworks". The network includes only the genes common to both networks, and the genes are listed in the same order for each network.

Examples

# NOT RUN {
# small example illustrating how a pair of networks is
# preprocessed to obtain and align a set of common genes
X1=rbind(
c(2.5,6.7,4.5,2.3,8.4,3.1),
c(1.2,0.7,4.0,9.1,6.6,7.1),
c(4.3,-1.2,7.5,3.8,1.0,9.3),
c(9.5,7.6,5.4,2.3,1.1,0.2))
colnames(X1)=paste("G",1:6,sep="")
X2=rbind(
c(4.5,2.4,6.8,5.6,4.5,1.2,4.5),
c(7.6,9.0,0.1,3.4,5.6,5.5,1.2),
c(8.3,4.5,7.0,1.2,4.3,3.7,6.8),
c(3.4,1.1,6.9,7.2,3.1,0.9,6.6),
c(3.4,2.2,1.3,5.5,9.8,6.7,0.6))
colnames(X2)=paste("G",8:2,sep="")
networks=new("pairOfNetworks",network1=X1,network2=X2)
get.common.networks(networks)
# }