condenseTrees

<code>condenseTrees</code> Condenses a set of equally parsimonious node labels 
into a single tree

Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.

Kenneth Hoehn

dowser

B Cell Receptor Phylogenetics Toolkit

Cole Jensen

Susanna Marquez

Jason Vander Heiden

Steven Kleinstein

condenseTrees function

<dl><dt>trees</dt>
<dd>List of the same tree with equally parsimonious labels</dd>
<dt>states</dt>
<dd>States in model</dd>
<dt>palette</dt>
<dd>Named vector with a color per state</dd></dl>

Arguments

Condense a set of equally parsimonious node labels into a single tree — condenseTrees

<dl>

<dt>trees</dt>
<dd>List of the same tree with equally parsimonious labels</dd>


<dt>states</dt>
<dd>States in model</dd>


<dt>palette</dt>
<dd>Named vector with a color per state</dd>

</dl>

condenseTrees: Condense a set of equally parsimonious node labels into a single tree

Description

Usage

Value

Arguments