getSubClones plots a tree or group of trees
getSubclones(
heavy,
light,
nproc = 1,
minseq = 1,
id = "sequence_id",
seq = "sequence_alignment",
clone = "clone_id",
cell = "cell_id",
v_call = "v_call",
j_call = "j_call",
junc_len = "junction_length",
nolight = "missing"
)a tibble containing
a tibble containing heavy chain sequences with clone_id
a tibble containing light chain sequences
number of cores for parallelization
minimum number of sequences per clone
name of the column containing sequence identifiers.
name of the column containing observed DNA sequences. All sequences in this column must be multiple aligned.
name of the column containing the identifier for the clone. All entries in this column should be identical.
name of the column containing identifier for cells.
name of the column containing V-segment allele assignments. All entries in this column should be identical to the gene level.
name of the column containing J-segment allele assignments. All entries in this column should be identical to the gene level.
name of the column containing the length of the junction as a numeric value. All entries in this column should be identical for any given clone.
string to use to indicate a missing light chain