dpcR (version 0.5)

adpcr-class: Class "adpcr" - end-point array digital PCR experiments

Description

A class specifically designed to contain results from end-point array digital PCR experiments. Data is represented as matrix, where each column describes different experiment. Type of data in all columns is specified in slot "type". Inherits from '>dpcr.

Slots

col_names

"character" vector naming columns in the array.

row_names

"character" vector naming rows in the array.

row_id

"integer" vector providing row indices of all runs.

col_id

"integer" vector providing column indices of all runs.

panel_id

"factor" naming the panel to which experiment belong.

Details

For more in-depth explanation of digital PCR data structure, see '>dpcr.

See Also

Data management: adpcr2panel, bind_dpcr, extract_run.

Plotting: plot_panel.

Tests: test_panel.

Simulation: sim_adpcr.

Real-time array digital PCR: '>rtadpcr.

Droplet digital PCR: '>dpcr.

Examples

# NOT RUN {
rand_array <- sim_adpcr(400, 1600, 100, pos_sums = FALSE, n_panels = 5)
one_rand_array <- extract_run(rand_array, 1)
plot_panel(one_rand_array, 40, 40)

# }