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dpcR (version 0.5)

count_test: Class "count_test"

Description

Objects of this class are created by test_counts.

Usage

# S4 method for count_test
summary(object)
# S4 method for count_test
coef(object)
# S4 method for count_test
show(object)
# S4 method for count_test,ANY
plot(x, aggregate = FALSE, nice = TRUE)

Arguments

object

of class count_test.

x

object of class count_test.

aggregate

logical, if TRUE experiments are aggregated according to their group.

nice

logical, if TRUE a more aesthetically pleasing (but harder to customize) version of the plot is created.

Methods (by generic)

  • summary: Summary statistics of assigned groups.

  • coef: Extract coefficients of groups.

  • show: Print both group_coef and test_res.

  • plot: plots mean number of molecules per partition and its confidence intervals.

Slots

group_coef

"data.frame" containing experiments, groups to which they belong and calculated values of rate (lambda).

test_res

"matrix" containing result of multiple comparisions t-test.

model

"character" name of GLM used to compare experiments.

Details

In case of the aggregated plot, mean confidence intervals for groups are presented as dashed lines.

See Also

test_counts.