Waypoint cells are cells spread across all of the trajectory such that there is no other cell that has a large geodesic distance to any of the waypoint cells.
add_cell_waypoints(trajectory, num_cells_selected = 100)is_wrapper_with_waypoint_cells(trajectory)
determine_cell_trajectory_positions(
milestone_ids,
milestone_network,
milestone_percentages,
progressions,
divergence_regions
)
select_waypoint_cells(
milestone_ids,
milestone_network,
milestone_percentages,
progressions,
divergence_regions,
num_cells_selected = 100
)
add_cell_waypoints returns a trajectory with waypoint_cells, a character vector containing the cell ids of the waypoint cells
select_waypoint_cells returns a character vector containing the cell ids of the waypoint cells
A dynwrap object with the waypoint cells added.
The trajectory as created by infer_trajectory() or add_trajectory()
About the number of cells selected as waypoints
The ids of the milestones in the trajectory. Type: Character vector.
The network of the milestones. Type: Data frame(from = character, to = character, length = numeric, directed = logical).
A data frame specifying what percentage milestone each cell consists of. Type: Data frame(cell_id = character, milestone_id = character, percentage = numeric).
Specifies the progression of a cell along a transition in the milestone_network. Type: Data frame(cell_id = character, from = character, to = character, percentage = numeric).
A data frame specifying the divergence regions between milestones (e.g. a bifurcation). Type: Data frame(divergence_id = character, milestone_id = character, is_start = logical).