create_ti_method_definition

The local method definition file describes a method that is runnable on the local system.
See <a href="/link/vignette(%22create_ti_method_definition%22%2C%20%22dynwrap%22)?package=dynwrap&version=1.2.4" data-mini-rdoc="dynwrap::vignette("create_ti_method_definition", "dynwrap")"><code>vignette("create_ti_method_definition", "dynwrap")</code></a> for a tutorial on how to create a containerized TI method.

create_ti_method

Provides functionality to infer trajectories from single-cell data,
represent them into a common format, and adapt them. Other biological information
can also be added, such as cellular grouping, RNA velocity and annotation.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Robrecht Cannoodt

dynwrap

Representing and Inferring Single-Cell Trajectories

Wouter Saelens

create_ti_method_definition function

<dl><dt>definition</dt>
<dd>A definition, see <code>definition()</code></dd>
<dt>script</dt>
<dd>Location of the script that will be executed. Has to contain a #!</dd>
<dt>return_function</dt>
<dd>Whether to return a function that allows you to override the default parameters, or just return the method meta data as is.</dd></dl>

Arguments

The local method definition file describes a method that is runnable on the local system.
See <a href='../doc/create_ti_method_definition.html'><code>vignette("create_ti_method_definition", "dynwrap")</code></a> for a tutorial on how to create a containerized TI method.

Create a TI method from a local method definition file — create_ti_method_definition

<dl>

<dt>definition</dt>
<dd>A definition, see <code>definition()</code></dd>


<dt>script</dt>
<dd>Location of the script that will be executed. Has to contain a #!</dd>


<dt>return_function</dt>
<dd>Whether to return a function that allows you to override the default parameters, or just return the method meta data as is.</dd>

</dl>

create_ti_method_definition: Create a TI method from a local method definition file

Description

Usage

Value

Arguments

Examples