simplify_trajectory

<ul>
<li>Milestones that are not a leaf or a branching point are removed: A -&gt; B -&gt; C becomes A -&gt; C</li>
<li>Cycles contain at least 3 nodes, ie. A -&gt; B -&gt; A becomes A -&gt; B -&gt; C -&gt; A</li>
<li>Loops are converted to a cycle, unless <code>allow_self_loops = TRUE</code></li>
</ul>

adapt_trajectory

Provides functionality to infer trajectories from single-cell data,
represent them into a common format, and adapt them. Other biological information
can also be added, such as cellular grouping, RNA velocity and annotation.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Robrecht Cannoodt

dynwrap

Representing and Inferring Single-Cell Trajectories

Wouter Saelens

simplify_trajectory function

<dl><dt>trajectory</dt>
<dd>The trajectory as created by <code>infer_trajectory()</code> or <code>add_trajectory()</code></dd>
<dt>allow_self_loops</dt>
<dd>Whether or not to allow self loops.</dd></dl>

Arguments

Simplify a trajectory by removing transient milestones — simplify_trajectory

<dl>

<dt>trajectory</dt>
<dd>The trajectory as created by <code>infer_trajectory()</code> or <code>add_trajectory()</code></dd>


<dt>allow_self_loops</dt>
<dd>Whether or not to allow self loops.</dd>

</dl>

simplify_trajectory: Simplify a trajectory by removing transient milestones

Description

Usage

Value

Arguments

Details