wrap_data

is_data_wrapper

A data wrapper for datasets and trajectories

create_trajectory

Provides functionality to infer trajectories from single-cell data,
represent them into a common format, and adapt them. Other biological information
can also be added, such as cellular grouping, RNA velocity and annotation.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Robrecht Cannoodt

dynwrap

Representing and Inferring Single-Cell Trajectories

Wouter Saelens

wrap_data function

<dl><dt>id</dt>
<dd>A unique identifier for the data. If <code>NULL</code>, a random string will be generated.</dd>
<dt>cell_ids</dt>
<dd>The identifiers of the cells.</dd>
<dt>cell_info</dt>
<dd>Optional meta-information pertaining the cells.</dd>
<dt>feature_ids</dt>
<dd>The identifiers of the features.</dd>
<dt>feature_info</dt>
<dd>Optional meta-information pertaining the features.</dd>
<dt>...</dt>
<dd>Extra information to be stored in the wrapper.</dd>
<dt>dataset</dt>
<dd>A dataset created by <code>wrap_data()</code> or <code>wrap_expression()</code></dd></dl>

Arguments

A data wrapper for datasets and trajectories — wrap_data

<dl>

<dt>id</dt>
<dd>A unique identifier for the data. If <code>NULL</code>, a random string will be generated.</dd>


<dt>cell_ids</dt>
<dd>The identifiers of the cells.</dd>


<dt>cell_info</dt>
<dd>Optional meta-information pertaining the cells.</dd>


<dt>feature_ids</dt>
<dd>The identifiers of the features.</dd>


<dt>feature_info</dt>
<dd>Optional meta-information pertaining the features.</dd>


<dt>...</dt>
<dd>Extra information to be stored in the wrapper.</dd>


<dt>dataset</dt>
<dd>A dataset created by <code>wrap_data()</code> or <code>wrap_expression()</code></dd>

</dl>

wrap_data: A data wrapper for datasets and trajectories

Description

Usage

Value

Arguments

Examples