.validate

AnnotParam internal methods

verbose

Relax validation parameters for gtf files

lenient

additional arguments passed to the retrieval function.
At the moment only forwarded to the <pkg>biomaRt</pkg> <code><a href="/link/getBM?package=easyRNASeq&version=2.8.2&to=biomaRt%3AgetBM" rd-options="biomaRt:getBM" data-mini-rdoc="biomaRt:getBM::getBM">getBM</a></code>
function.

These are <code><links4class>AnnotParam</links4class></code>{AnnotParam} class internal methods:
<ul><li>.validate validate the content of an AnnotParam object</li></ul>

internal

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

AnnotParam internal methods function

additional arguments passed to the retrieval function.
At the moment only forwarded to the <pkg>biomaRt</pkg> <code><a href="getBM" rd-options="biomaRt:getBM">getBM</a></code>
function.

These are <code><linkS4class>AnnotParam</linkS4class></code>{AnnotParam} class internal methods:
<ul><li>.validate validate the content of an AnnotParam object</li></ul>

Internal methods of AnnotParam objects

invisibly return a TRUE logical on success and stops on failure

AnnotParam internal methods: Internal methods of AnnotParam objects

Description

Usage

Arguments

Value