RNAseq

RNAseq class

RNAseq-class

A class holding all the necessary information and annotation to summarize
couts (number of reads) per features (i.e. exons or transcripts or genes)
for RNA-Seq experiments.

classes

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

RNAseq class function

Objects can be created by calls of the
form <code>new("RNAseq", ...)</code>.

RNAseq class: Class "RNAseq"

Description

Arguments

Objects from the Class

See Also

Examples