basename

basename methods

basename,BamFile-method

basename,BamFileList-method

an object of class <code><links4class>BamFile</links4class></code> or <code><links4class>BamFileList</links4class></code>

path

Display the basename of the bam file represented by a <code><links4class>BamFile</links4class></code> object.

methods

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

basename methods function

an object of class <code><linkS4class>BamFile</linkS4class></code> or <code><linkS4class>BamFileList</linkS4class></code>

Display the basename of the bam file represented by a <code><linkS4class>BamFile</linkS4class></code> object.

basename methods: Extend the basename function to display Rsamtools BamFile class basename

Description

Usage

Arguments