easyRNASeq (version 2.8.2)

easyRNASeq AnnotParam accessors: Accessors for AnnotParam class

Description

These functions and generics define `accessors` (to get and set values) for AnnotParam objects within the easyRNASeq package. Implemented are:

• datasource
• type

Usage

datasource(object)
## S3 method for class 'AnnotParam':
type(x)

Arguments

object

An object derived from class AnnotParam.

x

An object derived from class AnnotParam.

Value

• The value of the corresponding slot.

See Also

The AnnotParam class. The type and organism generics are imported from the BSgenome and Biostrings package, respectively.

Examples

annot <- AnnotParam(
  datasource=system.file(
                        "extdata",
                        "Dmel-mRNA-exon-r5.52.gff3",
                        package="RnaSeqTutorial"))
## get the datasource Parameter
datasource(annot)