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ebirdst (version 0.3.3)

Access and Analyze eBird Status and Trends Data

Description

Tools to download, map, plot and analyze eBird Status and Trends data (). eBird () is a global database of bird observations collected by citizen scientists. eBird Status and Trends uses these data to model continental bird abundances, range boundaries, habitat associations, and trends.

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Install

install.packages('ebirdst')

Monthly Downloads

592

Version

0.3.3

License

GPL-3

Issues

0

Pull Requests

0

Stars

69

Forks

12

Maintainer

Matthew Strimas-Mackey

Last Published

November 12th, 2021

Functions in ebirdst (0.3.3)

ebirdst_download

Download eBird Status and Trends Data
ebirdst_extent

Construct a spatiotemporal extent object to subset Status and Trends data
bernoulli_dev

Bernoulli deviance
calc_bins

Calculates relative abundance bins (breaks) based for mapping
convert_classes

Converts cryptic cover class names to readable land cover names
binom_test_p

Binomial test for ensemble support
abundance_palette

eBird Status and Trends color palettes for mapping
date_to_st_week

Get the Status and Trends week that a date falls into
calc_full_extent

Calculate the spatial extent of non-zero data in a raster
ebirdst

ebirdst: Tools to Load, Map, Plot, and Analyze eBird Status and Trends Data Products
ebirdst_runs

Data frame of available eBird Status and Trends species
ebirdst_weeks

eBird Status and Trends weeks
ebirdst_subset

Subset eBird Status and Trends data spatiotemporally
load_raster

Load eBird Status and Trends raster data cubes
load_stixels

Load summary data for eBird Status and Trends stixels
load_pis

Load eBird Status and Trends predictor importance data
poisson_dev

Poisson deviance
load_predictions

Load eBird Status and Trends test data predictions
project_extent

Transform a spatiotemporal extent to a different CRS
sample_grid

Spatiotemporal sampling of points on a grid
load_fac_map_parameters

Load full annual cycle map parameters
ebirdst_ppms_ts

Time series of eBird Status and Trends PPMs summarized temporally
get_species

Get eBird species code for a set of species
parse_raster_dates

Parse data cube layer names into dates
ebirdst_predictors

eBird Status and Trends predictors
get_species_path

Get the data package path for a given species
load_pds

Load eBird Status and Trends partial dependence data
stixelize

Generate polygons for eBird Status and Trends stixels
ebirdst_habitat

eBird Status and Trends predictive habitat associations
ebirdst_ppms

eBird Status and Trends predictive performance metrics (PPMs)
label_raster_stack

Label data cubes with the week date for each band
load_config

Load eBird Status and Trends configuration file
set_ebirdst_access_key

Store the eBird Status and Trends access key
%>%

Pipe operator
stixel_footprint

Calculate the spatial footprint of a set of stixels
plot_pds

Plot partial dependency (PD) line plots
plot_pis

Plot predictor importance (PI) box plots