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ebirdst (version 2.2021.3)

Access and Analyze eBird Status and Trends Data

Description

Tools to download, load, plot, and analyze eBird Status and Trends Data Products (). eBird () is a global database of bird observations collected by member of the public. eBird Status and Trends uses these data to model global bird abundances, range boundaries, and habitat associations at a high spatial and temporal resolution.

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Version

Install

install.packages('ebirdst')

Monthly Downloads

592

Version

2.2021.3

License

GPL-3

Issues

0

Pull Requests

1

Stars

27

Forks

2

Maintainer

Matthew Strimas-Mackey

Last Published

May 9th, 2023

Functions in ebirdst (2.2021.3)

ebirdst_predictors

eBird Status and Trends predictors
ebirdst_version

eBird Status and Trends Data Products version
ebirdst_subset

Subset eBird Status and Trends data spatiotemporally
ebirdst_extent

Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_habitat

eBird Status and Trends predictive habitat associations
ebirdst_ppms

eBird Status and Trends predictive performance metrics (PPMs)
get_species

Get eBird species code for a set of species
ebirdst_weeks

eBird Status and Trends weeks
ebirdst_runs

Data frame of available eBird Status and Trends species
ebirdst_ppms_ts

Time series of eBird Status and Trends PPMs summarized temporally
load_pis

Load eBird Status and Trends predictor importance data
load_fac_map_parameters

Load full annual cycle map parameters
load_ranges

Load seasonal eBird Status and Trends range polygons
plot_pds

Plot partial dependency (PD) line plots
load_predictions

Load eBird Status and Trends test data predictions
load_config

Load eBird Status and Trends configuration file
load_pds

Load eBird Status and Trends partial dependence data
set_ebirdst_access_key

Store the eBird Status and Trends access key
plot_pis

Plot predictor importance (PI) box plots
get_species_path

Get the path to the data package for a given species
poisson_dev

Poisson deviance
load_stixels

Load summary data for eBird Status and Trends stixels
load_raster

Load eBird Status and Trends raster data cubes
project_extent

Transform a spatiotemporal extent to a different CRS
stixelize

Generate polygons for eBird Status and Trends stixels
grid_sample

Spatiotemporal grid sampling of observation data
%>%

Pipe operator
parse_raster_dates

Parse weekly dates from raster layer names
date_to_st_week

Get the Status and Trends week that a date falls into
abundance_palette

eBird Status and Trends color palettes for mapping
ebirdst_download

Download eBird Status and Trends Data Products
calculate_mcc_f1

Calculate MCC and F1 score
binom_test_p

Binomial test for ensemble support
bernoulli_dev

Bernoulli deviance
ebirdst

ebirdst: Tools to Load, Map, Plot, and Analyze eBird Status and Trends Data Products
assign_to_grid

Assign points to a spacetime grid
convert_classes

Converts cryptic cover class names to readable land cover names
ebirdst_data_dir

Path to eBird Status and Trends data download directory