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ecospat (version 4.1.1)

ecospat.testTree: Test Tree For The Ecospat package

Description

The tree object is a phylogenetic tree of class 'phylo' (see read.tree) that contains data of 50 angiosperm species from the Western Swiss Alps.

Arguments

Format

ecospat.testTree is a tree contains the following species:

[1] "Rumex_acetosa" [2] "Polygonum_bistorta" [3] "Polygonum_viviparum" [4] "Rumex_crispus" [5] "Cerastium_latifolium" [6] "Silene_acaulis" [7] "Gypsophila_repens" [8] "Vaccinium_gaultherioides" [9] "Soldanella_alpina" [10] "Cruciata_laevipes" [11] "Galium_album" [12] "Galium_anisophyllon" [13] "Galium_megalospermum" [14] "Gentiana_verna" [15] "Gentiana_bavarica" [16] "Gentiana_purpurea" [17] "Gentiana_lutea" [18] "Bartsia_alpina" [19] "Rhinanthus_alectorolophus" [20] "Prunella_grandiflora" [21] "Acinos_alpinus" [22] "Plantago_alpina" [23] "Plantago_lanceolata" [24] "Veronica_officinalis" [25] "Veronica_aphylla" [26] "Veronica_alpina" [27] "Veronica_chamaedrys" [28] "Veronica_persica" [29] "Globularia_cordifolia" [30] "Globularia_nudicaulis" [31] "Myosotis_alpestris" [32] "Myosotis_arvensis" [33] "Aposeris_foetida" [34] "Centaurea_montana" [35] "Hieracium_lactucella" [36] "Leontodon_helveticus" [37] "Leontodon_autumnalis" [38] "Hypochaeris_radicata" [39] "Achillea_atrata" [40] "Achillea_millefolium" [41] "Homogyne_alpina" [42] "Senecio_doronicum" [43] "Adenostyles_glabra" [44] "Arnica_montana" [45] "Aster_bellidiastrum" [46] "Bellis_perennis" [47] "Doronicum_grandiflorum" [48] "Phyteuma_orbiculare" [49] "Phyteuma_spicatum" [50] "Campanula_rotundifolia"

Author

Charlotte Ndiribe charlotte.ndiribe@unil.ch, Nicolas Salamin nicolas.salamin@unil.ch and Antoine Guisan antoine.guisan@unil.ch

References

Ndiribe, C., L. Pellissier, S. Antonelli, A. Dubuis, J. Pottier, P. Vittoz, A. Guisan and N. Salamin. 2013. Phylogenetic plant community structure along elevation is lineage specific. Ecology and Evolution, 3, 4925-4939.

Examples

Run this code
if(require("ape",quietly=TRUE)){
  fpath <- system.file("extdata", "ecospat.testTree.tre", package="ecospat")
  tree <- ape::read.tree(fpath)
  plot(tree)
}

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