systematicSubset

numeric vector of the values by which the indices are ordered.

order.by


Take a systematic subset of indices stratified by a ranking variable.


subset

Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, SAGE and CAGE.

Yunshun Chen

edgeR

Empirical Analysis of Digital Gene Expression Data in R

systematicSubset function

Take a systematic subset of indices stratified by a ranking variable.

systematicSubset: Take a systematic subset of indices.

Description

Usage

Arguments

Value

See Also

Examples