eemR (version 1.0.2)

eem_biological_index: Calculate the biological fluorescence index (BIX)

Description

The biological fluorescence index (BIX) is calculated by dividing the fluorescence at excitation 310 nm and emission at 380 nm (ex = 310, em = 380) by that at excitation 310 nm and emission at 430 nm (ex = 310, em = 430).

Usage

eem_biological_index(eem, verbose = TRUE)

Value

An object of class eemlist.

A data frame containing the biological index (BIX) for each eem.

Arguments

eem

An object of class eemlist.

verbose

Logical determining if additional messages should be printed.

Interpolation

Different excitation and emission wavelengths are often used to measure EEMs. Hence, it is possible to have mismatchs between measured wavelengths and wavelengths used to calculate specific metrics. In these circumstances, EEMs are interpolated using the interp2 function from the parcma library. A message warning the user will be prompted if data interpolation is performed.

References

Huguet, A., Vacher, L., Relexans, S., Saubusse, S., Froidefond, J. M., & Parlanti, E. (2009). Properties of fluorescent dissolved organic matter in the Gironde Estuary. Organic Geochemistry, 40(6), 706-719.

tools:::Rd_expr_doi("10.1016/j.orggeochem.2009.03.002")

See Also

interp2

Examples

file <- system.file("extdata/cary/scans_day_1/", package = "eemR")
eem <- eem_read(file, import_function = "cary")

eem_biological_index(eem)