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eggCounts (version 2.4)
Hierarchical Modelling of Faecal Egg Counts
Description
An implementation of Bayesian hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using 'Stan'
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Install
install.packages('eggCounts')
Monthly Downloads
438
Version
2.4
License
GPL (>= 3)
Maintainer
Craig Wang
Last Published
October 14th, 2023
Functions in eggCounts (2.4)
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simData2s
Simulate faecal egg count data (2-sample situation)
simData1s
Simulate faecal egg count data (1-sample situation)
plotCounts
Plot faecal egg count data
stan2mcmc
Convert a Stanfit object to a MCMC object
fec_stan
Modelling of faecal egg count data (one-sample case)
getPrior_delta
Get prior parameters from Beta distribution
fecr_probs
Compute probability of the reduction parameter relative to a given threshold
getPrior_mu
Get prior parameters from Gamma distribution
eggCounts-package
Hierarchical modelling of faecal egg counts
fecrtCI
Compute standard FECRT according to WAAVP guidelines
fecr_stanSimple
Model the reduction of faecal egg count using a simple Bayesian model
fecr_stanExtra
Model the reduction of faecal egg count using custom models
fecr_stan
Model the reduction of faecal egg count
epgs
Faecal egg count samples (before and after treatment)