TimeWeighted.temperature.mean Average temperature weigthed by the time at each temperature for all incubation
TimeWeighted.temperature.se Standard error for the average temperature weigthed by the time at each temperature for all incubation
MassWeighted.temperature.mean Average temperature weigthed by the growth of embryo for all incubation
MassWeighted.temperature.se Standard error for the average temperature weigthed by the growth of embryo for all incubation
TSP.TimeWeighted.temperature.mean Average temperature during the TSP weigthed by the time at each temperature
TSP.TimeWeighted.temperature.se Standard error for the average temperature during the TSP weigthed by the time at each temperature
TSP.MassWeighted.temperature.mean Average temperature during the TSP weigthed by the mass increase at each temperature
TSP.MassWeighted.temperature.se Standard error for the average temperature during the TSP weigthed by the mass increase at each temperature
TSP.STRNWeighted.temperature.mean Averaged temperature during the TSP weighted by sexualisation thermal reaction norm
TSP.STRNWeighted.temperature.se Standard error for temperature during the TSP weighted by sexualisation thermal reaction norm
TSP.MassWeighted.STRNWeighted.temperature.mean Averaged temperature during the TSP weighted by sexualisation thermal reaction norm and embryo growth
TSP.MassWeighted.STRNWeighted.temperature.se Standard error for temperature during the TSP weighted by sexualisation thermal reaction norm and embryo growth
TSP.length.mean Average length of the TSP
TSP.length.se Standard error for length of the TSP
TSP.begin.mean Average time of the beginning of the TSP
TSP.begin.se Standard error for the beginning of the TSP
TSP.end.mean Average time of the endd of the TSP
TSP.end.se Standard error for the end of the TSP
Incubation.length.mean Average number of days for the incubation length
Incubation.length.se Standard error for number of days for the incubation length
Middlethird.begin.mean Average day at which the middle third incubation begins
Middlethird.begin.se Standard error for day at which the middle third incubation begins
Middlethird.end.mean Average day at which the middle third incubation ends
Middlethird.end.se Standard error at which the middle third incubation ends
Middlethird.length.mean Average days for second third of incubation
Middlethird.length.se Standard error for second third of incubation
MiddleThird.TimeWeighted.temperature.mean Average temperature during the middle third of incubation
MiddleThird.TimeWeighted.temperature.se Standard error for the temperature during the middle third of incubation
MiddleThird.MassWeighted.temperature.mean Average temperature during the middle third of incubation weighted by embryo growth
MiddleThird.MassWeighted.temperature.se Standard error for temperature during the middle third of incubation weighted by embryo growth
The metric object is a list composed of data.frames which have the following attributes for each element of the list:
time.begin.tsp Average time at the beginning of TSP
time.end.tsp Average time at the end of TSP
time.begin.middlethird Average time at the beginning of the middle third of incubation
time.begin.middlethird Average time at the end of the middle third of incubation
time.begin.tsp.se Standard error for the time at the beginning of TSP
time.end.tsp.se Standard error for the time at the end of TSP
time.begin.middlethird.se Standard error for the time at the beginning of the middle third of incubation
time.end.middlethird.se Standard error for the time at the end of the middle third of incubation
stopattest NA if stopattest was false, TRUE if at least one incubation series was longer than hatchling size and FALSE at contrary
If you indicate new set of temperatures, you must probably also indicate new test values. Note: three species have predefined embryo stages. embryo.stages parameter can take the values:
Caretta caretta.SCL
Chelonia mydas.SCL
Emys orbicularis.SCL
Emys orbicularis.mass
But remember that mass is not the best proxy to describe the growth of an embryo because it can decrease if the subtrate becomes dry. The progress bar is based on replicates and timeseries.
info.nests(x = NULL, parameters = NULL, NestsResult = NULL, fixed.parameters = NULL, SE = NULL, temperatures = NULL, derivate = NULL, test = NULL, stopattest = FALSE, M0 = NULL, series = "all", TSP.borders = NULL, embryo.stages = "Caretta caretta.SCL", replicate.CI = 1, weight = NULL, out = "Likelihood", fill = NULL, SexualisationTRN = NULL, metric.end.incubation = NULL, metabolic.heating = 0, temperature.heterogenetity = 0, progress = FALSE, warnings = TRUE, parallel = TRUE)## Not run:
# library(embryogrowth)
# data(resultNest_4p)
# summary.nests <- info.nests(resultNest_4p, out="summary", replicate.CI=20,
# SE=c(DHA=17.7357362231266, DHH=55.2002231419364,
# T12H=0.850237694629938, Rho25=8.47868153136681),
# progress=TRUE)
# # Result is in summary.nests$summary
# infoall <- info.nests(resultNest_4p)
# # Result is a value
# infoall.df <- info.nests(resultNest_4p, out="metric", replicate.CI=20,
# SE=c(DHA=17.7357362231266, DHH=55.2002231419364,
# T12H=0.850237694629938, Rho25=8.47868153136681),
# progress=TRUE)
# # Result is in summary.nests$metric
# infoall.both <- info.nests(resultNest_4p, out=c("metric", "summary"), replicate.CI=20,
# SE=c(DHA=17.7357362231266, DHH=55.2002231419364,
# T12H=0.850237694629938, Rho25=8.47868153136681),
# progress=TRUE)
# # Results are in summary.nests$summary and in summary.nests$metric
# ## End(Not run)
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