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emdbook (version 1.3.13)

Support Functions and Data for "Ecological Models and Data"

Description

Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

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Version

Install

install.packages('emdbook')

Monthly Downloads

6,025

Version

1.3.13

License

GPL

Maintainer

Ben Bolker

Last Published

July 3rd, 2023

Functions in emdbook (1.3.13)

Myxo

Myxomatosis titer data
Damselfish

Reef fish (damselfish) data
Fir

Data on fir (Abies) life history
Lily

Glacier lily occurrence and fecundity data
SeedPred

Seed predation data set from Duncan and Duncan 2000
Reedfrog

Data on reed frog predation experiments
calcslice

Negative log-likelihood slice
deprecated

Deprecated (obsolete) functions
curve3d

Plot a 3D surface representing a 2D curve
deltamethod

Delta method functions
credint

Calculate Bayesian credible intervals
dmvnorm

Multivariate normal distribution density function
dchibarsq

Mixed chi-squared distributions
contour3d

Superimpose contour lines on a 3D plot
dbetabinom

Beta-binomial distribution
dzinbinom

Zero-inflated negative binomial distribution
lseq

Log-spaced sequence
gridsearch2d

Graphical grid search in 2D
lump.mcmc.list

Utility functions for mcmc objects
metropSB

Metropolis-Szymura-Barton algorithm
scinot

Scientific notation as LaTeX/expression()
get.emdbook.packages

install and update auxiliary packages
emdbook-package

tools:::Rd_package_title("emdbook")
trcoef

Transform coefficients
perturb.params

Create a list of perturbed parameters
lambertW

Lambert W function
apply2d

Apply a function to a combination of vectors
as.mcmc.bugs

Convert WinBUGS output to CODA format
HPDregionplot

Plot highest posterior density region
GobySurvival

Goby (reef fish) survivorship data