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emdbook (version 1.3.2.1)

Ecological models and data (book support)

Description

Auxiliary functions and data sets for _Ecological Models and Data_, a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0)

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Version

Install

install.packages('emdbook')

Monthly Downloads

6,199

Version

1.3.2.1

License

GPL

Maintainer

Last Published

September 10th, 2012

Functions in emdbook (1.3.2.1)

lambertW

Lambert W function
as.mcmc.bugs

Convert WinBUGS output to CODA format
Reedfrog

Data on reed frog predation experiments
calcslice

Negative log-likelihood slice
curve3d

Plot a 3D surface representing a 2D curve
deltamethod

Delta method functions
HPDregionplot

Plot highest posterior density region
apply2d

Apply a function to a combination of vectors
dmvnorm

Multivariate normal distribution density function
Damselfish

Reef fish (damselfish) data
perturb.params

Create a list of perturbed parameters
Fir

Data on fir (Abies) life history
dchibarsq

Mixed chi-squared distributions
dzinbinom

Zero-inflated negative binomial distribution
scinot

Scientific notation as LaTeX/expression()
metropSB

Metropolis-Szymura-Barton algorithm
Lily

Glacier lily occurrence and fecundity data
dbetabinom

Beta-binomial distribution
emdbook-package

ecological models and data
deprecated

Deprecated (obsolete) functions
trcoef

Transform coefficients
contour3d

Superimpose contour lines on a 3D plot
get.emdbook.packages

install and update auxiliary packages
lump.mcmc.list

Utility functions for mcmc objects
Myxo

Myxomatosis titer data
gridsearch2d

Graphical grid search in 2D
credint

Calculate Bayesian credible intervals
lseq

Log-spaced sequence
SeedPred

Seed predation data set from Duncan and Duncan 2000